Biojournals.com Latest Phylogenomics Publications http://www.biojournals.com/Phylogenomics.html Latest publications on Phylogenomics en-us biojournals@sci7.com hourly 1 2000-01-01T12:00+00:00 http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=19004754 Evolutionary position of breviate amoebae and the primary eukaryote divergence. Integration of ultrastructural and molecular sequence data has revealed ... http://dx.doi.org/10.1098/rspb.2008.1358 Proc Biol Sci. 2008 Nov 11. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=18974088 The multiple evolutionary histories of dioxygen reductases: implications for the origin and evolution of aerobic respiration. Understanding the origin and evolution of cellular processes is ... http://dx.doi.org/10.1093/molbev/msn246 Mol Biol Evol. 2008 Oct 29. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=18852873 Tree of life based on genome context networks. Efforts in phylogenomics have greatly improved our understanding of the ... http://dx.doi.org/10.1371/journal.pone.0003357 PLoS ONE. 2008;3(10):e3357. Epub 2008 Oct 9. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=18789659 Formulating and testing hypotheses in functional genomics. OBJECTIVE: The ultimate goal of any genome-scale experiment is to provide ... http://dx.doi.org/10.1016/j.artmed.2008.08.003 Artif Intell Med. 2008 Sep 11. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=18776193 INTREPID--INformation-theoretic TREe traversal for Protein functional site IDentification. MOTIVATION: Identification of functionally important residues in proteins ... http://dx.doi.org/10.1093/bioinformatics/btn474 Bioinformatics. 2008 Nov 1;24(21):2445-52. Epub 2008 Sep 6. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=18755041 Comparative phylogenomics and multi-gene cluster analyses of the Citrus Huanglongbing (HLB)-associated bacterium Candidatus Liberibacter. ABSTRACT: BACKGROUND: Huanglongbing (HLB, previously known as citrus ... http://dx.doi.org/10.1186/1756-0500-1-72 BMC Res Notes. 2008 Aug 28;1:72. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=18709599 Assessing the performance of single-copy genes for recovering robust phylogenies. Phylogenies involving nonmodel species are based on a few genes, mostly ... http://dx.doi.org/10.1080/10635150802306527 Syst Biol. 2008 Aug;57(4):613-27. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=18679816 Phylogenomics of African guenons. The karyotypes of 28 specimens belonging to 26 species of Cercopithecinae ... http://dx.doi.org/10.1007/s10577-008-1226-6 Chromosome Res. 2008;16(5):783-99. Epub 2008 Jul 13. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=18629663 Amniote phylogenomics: testing evolutionary hypotheses with BAC library scanning and targeted clone analysis of large-scale DNA sequences from reptiles. Phylogenomics research integrating established principles of systematic ... http://dx.doi.org/10.1007/978-1-59745-581-7_7 Methods Mol Biol. 2008;422:91-117. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=18522922 Phylogenomics reveals a new 'megagroup' including most photosynthetic eukaryotes. Advances in molecular phylogeny of eukaryotes have suggested a tree ... http://dx.doi.org/10.1098/rsbl.2008.0224 Biol Lett. 2008 Aug 23;4(4):366-9. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=18490264 Coronavirus phylogeny based on base-base correlation. With more and more complete genome sequences having been released, ... Int J Bioinform Res Appl. 2008;4(2):211-20. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=18426584 Phylogenomics of plant genomes: a methodology for genome-wide searches for orthologs in plants. BACKGROUND: Gene ortholog identification is now a major objective for ... http://dx.doi.org/10.1186/1471-2164-9-183 BMC Genomics. 2008 Apr 21;9:183. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=18378040 The eukaryotic tree of life: endosymbiosis takes its TOL. Resolving the structure of the eukaryotic tree of life remains one of the ... http://dx.doi.org/10.1016/j.tree.2008.02.004 Trends Ecol Evol. 2008 May;23(5):268-75. Epub 2008 Apr 2. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=18366758 Using ESTs for phylogenomics: can one accurately infer a phylogenetic tree from a gappy alignment? BACKGROUND: While full genome sequences are still only available for a ... http://dx.doi.org/10.1186/1471-2148-8-95 BMC Evol Biol. 2008 Mar 26;8:95. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=18337260 PlasmoGF: an integrated system for comparative genomics and phylogenetic analysis of Plasmodium gene families. Malaria, one of the world's most common diseases, is caused by the ... http://dx.doi.org/10.1093/bioinformatics/btn092 Bioinformatics. 2008 May 1;24(9):1217-20. Epub 2008 Mar 12.